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Publication Year: 2024

831 to 840 of 861 Results

01_De-novo_assemblies_from_SRA.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374 For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.
02_Genome_Annotation_Files.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37 The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...
03_Proteomes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97 A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.
04_Consensus_KOs.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3 Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...
05_CAZYmes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80 Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...
00_readme.txt Jan 15, 2024 - Mental Health on campus: personality traits and attitudes towards seeking psychological help Plain Text - 1.2 KB - MD5: fa2395c50847a15d63751f8baa515fce
Dataset Sample.tab Jan 15, 2024 - Mental Health on campus: personality traits and attitudes towards seeking psychological help Tab-Delimited - 184.1 KB - MD5: af61581d0f279b91a24fee18360ca895
P053.tab Jan 1, 2024 - Exploring boundary conditions of the single-code/default strategy in pigeons Delimitações tabulares - 3.1 KB - MD5: f60285381ff18985bab0f46508b8fb75
P068.tab Jan 1, 2024 - Exploring boundary conditions of the single-code/default strategy in pigeons Delimitações tabulares - 2.5 KB - MD5: f2141ac2c74ff902e9f1bc871e7076e4
P088.tab Jan 1, 2024 - Exploring boundary conditions of the single-code/default strategy in pigeons Delimitações tabulares - 2.3 KB - MD5: 012a9299a04208fea17e130a274dad7a

01_De-novo_assemblies_from_SRA.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374

For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.

02_Genome_Annotation_Files.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37

The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...

03_Proteomes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97

A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.

04_Consensus_KOs.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3

Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...

05_CAZYmes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80

Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

00_readme.txt

Jan 15, 2024 - Mental Health on campus: personality traits and attitudes towards seeking psychological help

Plain Text - 1.2 KB - MD5: fa2395c50847a15d63751f8baa515fce

Dataset Sample.tab

Jan 15, 2024 - Mental Health on campus: personality traits and attitudes towards seeking psychological help

Tab-Delimited - 184.1 KB - MD5: af61581d0f279b91a24fee18360ca895

P053.tab

Jan 1, 2024 - Exploring boundary conditions of the single-code/default strategy in pigeons

Delimitações tabulares - 3.1 KB - MD5: f60285381ff18985bab0f46508b8fb75

P068.tab

Jan 1, 2024 - Exploring boundary conditions of the single-code/default strategy in pigeons

Delimitações tabulares - 2.5 KB - MD5: f2141ac2c74ff902e9f1bc871e7076e4

P088.tab

Jan 1, 2024 - Exploring boundary conditions of the single-code/default strategy in pigeons

Delimitações tabulares - 2.3 KB - MD5: 012a9299a04208fea17e130a274dad7a

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