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Type: (files OR datasets)

1,921 to 1,930 of 2,942 Results

P967.tab Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame? Tab-Delimited - 3.6 KB - MD5: 4445a69519e5b65abdb1457ecf8c5790
PG39.tab Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame? Tab-Delimited - 2.3 KB - MD5: 69c217d542814e166eb5025d67d48ef7
PG47.tab Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame? Tab-Delimited - 6.9 KB - MD5: b82831c71d6b4d817bb3a887322677ce
06_ListOfConsensusProteins.rar Feb 20, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 2.5 KB - MD5: 62b356b6a2fe8012385ee8436b75158b List of 1131 proteins established as core, present in all the non-Saccharomyces genomes analysed
00_Readme.txt Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome Plain Text - 3.3 KB - MD5: 9bcd61f1318ea91f1dae36a2463b5c4c
01_De-novo_assemblies_from_SRA.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374 For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.
02_Genome_Annotation_Files.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37 The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...
03_Proteomes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97 A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.
04_Consensus_KOs.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3 Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...
05_CAZYmes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80 Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

P967.tab

Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame?

Tab-Delimited - 3.6 KB - MD5: 4445a69519e5b65abdb1457ecf8c5790

PG39.tab

Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame?

Tab-Delimited - 2.3 KB - MD5: 69c217d542814e166eb5025d67d48ef7

PG47.tab

Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame?

Tab-Delimited - 6.9 KB - MD5: b82831c71d6b4d817bb3a887322677ce

06_ListOfConsensusProteins.rar

Feb 20, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 2.5 KB - MD5: 62b356b6a2fe8012385ee8436b75158b

List of 1131 proteins established as core, present in all the non-Saccharomyces genomes analysed

00_Readme.txt

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

Plain Text - 3.3 KB - MD5: 9bcd61f1318ea91f1dae36a2463b5c4c

01_De-novo_assemblies_from_SRA.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374

For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.

02_Genome_Annotation_Files.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37

The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...

03_Proteomes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97

A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.

04_Consensus_KOs.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3

Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...

05_CAZYmes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80

Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

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