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Publication Year: 2024

931 to 940 of 967 Results

PG47.tab Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame? Tab-Delimited - 6.9 KB - MD5: b82831c71d6b4d817bb3a887322677ce
Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome Feb 20, 2024 - Centro de Biologia Molecular e Ambiental Franco-Duarte, Ricardo; Fernandes, Ticiana; Sousa, Maria João; Sampaio, Paula; Rito, Teresa; Soares, Pedro, 2024, "Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome", https://doi.org/10.34622/datarepositorium/WPHMJL, Repositório de Dados da Universidade do Minho, V2 Dataset to support manuscript with the same title. The submitted documents were obtained with the following procedures: For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3....
06_ListOfConsensusProteins.rar Feb 20, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 2.5 KB - MD5: 62b356b6a2fe8012385ee8436b75158b List of 1131 proteins established as core, present in all the non-Saccharomyces genomes analysed
Escola GDI(Universidade do Minho) Feb 14, 2024Bibliotecas UMinho Coleção para a realização de exercícios práticos no contexto das Escolas de Inverno de GDI e de Verão de Ciência Aberta.
00_Readme.txt Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome Plain Text - 3.3 KB - MD5: 9bcd61f1318ea91f1dae36a2463b5c4c
01_De-novo_assemblies_from_SRA.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374 For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.
02_Genome_Annotation_Files.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37 The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...
03_Proteomes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97 A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.
04_Consensus_KOs.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3 Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...
05_CAZYmes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80 Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

PG47.tab

Feb 23, 2024 - Choice biases in delayed matching: is the inter-trial interval always to blame?

Tab-Delimited - 6.9 KB - MD5: b82831c71d6b4d817bb3a887322677ce

Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

Feb 20, 2024 - Centro de Biologia Molecular e Ambiental

Franco-Duarte, Ricardo; Fernandes, Ticiana; Sousa, Maria João; Sampaio, Paula; Rito, Teresa; Soares, Pedro, 2024, "Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome", https://doi.org/10.34622/datarepositorium/WPHMJL, Repositório de Dados da Universidade do Minho, V2

Dataset to support manuscript with the same title. The submitted documents were obtained with the following procedures: For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3....

06_ListOfConsensusProteins.rar

Feb 20, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 2.5 KB - MD5: 62b356b6a2fe8012385ee8436b75158b

List of 1131 proteins established as core, present in all the non-Saccharomyces genomes analysed

Escola GDI(Universidade do Minho)

Feb 14, 2024Bibliotecas UMinho

Coleção para a realização de exercícios práticos no contexto das Escolas de Inverno de GDI e de Verão de Ciência Aberta.

00_Readme.txt

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

Plain Text - 3.3 KB - MD5: 9bcd61f1318ea91f1dae36a2463b5c4c

01_De-novo_assemblies_from_SRA.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374

For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.

02_Genome_Annotation_Files.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37

The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...

03_Proteomes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97

A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.

04_Consensus_KOs.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3

Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...

05_CAZYmes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80

Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

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