Repositório de Dados da Universidade do Minho

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1 to 8 of 8 Results

DataRepositorium_CBM.tab Aug 2, 2024 - CBM Reading Screening- Monitorização com base no curriíulo - truagem na leitura Tab-Delimited - 31.6 KB - MD5: e001fef3b5ce582cf7cd04bad8ab594e CBM reading data
04_termo_consentimento_informado_FRM.pdf May 10, 2024 - Dados da hashtag #Nem1PraTrás 2019 e 2021 Adobe PDF - 102.4 KB - MD5: be6a86c406a7b82156c4062ab31c35ff Termo de consentimento do Gerente de Comunicação e Distribuição da Fundação Roberto Marinho no período de 2019 a 2024
06_ListOfConsensusProteins.rar Feb 20, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 2.5 KB - MD5: 62b356b6a2fe8012385ee8436b75158b List of 1131 proteins established as core, present in all the non-Saccharomyces genomes analysed
01_De-novo_assemblies_from_SRA.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374 For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.
02_Genome_Annotation_Files.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37 The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...
03_Proteomes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97 A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.
04_Consensus_KOs.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3 Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...
05_CAZYmes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80 Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

DataRepositorium_CBM.tab

Aug 2, 2024 - CBM Reading Screening- Monitorização com base no curriíulo - truagem na leitura

Tab-Delimited - 31.6 KB - MD5: e001fef3b5ce582cf7cd04bad8ab594e

CBM reading data

04_termo_consentimento_informado_FRM.pdf

May 10, 2024 - Dados da hashtag #Nem1PraTrás 2019 e 2021

Adobe PDF - 102.4 KB - MD5: be6a86c406a7b82156c4062ab31c35ff

Termo de consentimento do Gerente de Comunicação e Distribuição da Fundação Roberto Marinho no período de 2019 a 2024

06_ListOfConsensusProteins.rar

Feb 20, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 2.5 KB - MD5: 62b356b6a2fe8012385ee8436b75158b

List of 1131 proteins established as core, present in all the non-Saccharomyces genomes analysed

01_De-novo_assemblies_from_SRA.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374

For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.

02_Genome_Annotation_Files.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37

The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...

03_Proteomes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97

A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.

04_Consensus_KOs.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 12.2 MB - MD5: 89d3865b483ca694fbb6efece0f3c6f3

Functional genomic annotation was performed using three tools, for increased robustness, as being the three most used tools available for functional annotation: i) eggNOG-mapper v.5.0 (Jensen et al. 2008); ii) kofamKOALA v. 2022-04-03 (Aramaki et al. 2020); iii) KAAS-KEEG Automat...

05_CAZYmes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.6 MB - MD5: b45a83c6a10236349ca433765fff1c80

Gene function predictions were also accomplished by assessing the Carbohydrate-Active EnZymes (CAZymes) database (Cantarel et al. 2009), using dbCAN2 software (Zhang et al. 2018), testing three different annotation tools to increase robustness, HMMER, eCAMI and DIAMOND, and compi...

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