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1 to 10 of 47 Results

00_README.txt Mar 3, 2023 - Machine Learning Texture Optimization Plain Text - 1.0 KB - MD5: 389bfc2f1a11e6e5d5229657a35eafb9
inputs.tab Mar 3, 2023 - Machine Learning Texture Optimization Tab-Delimited - 14.1 MB - MD5: ba4bc1b2c58220469b88aa09f1397912
inputs_test_set.csv Mar 3, 2023 - Machine Learning Texture Optimization Comma Separated Values - 403.7 KB - MD5: 4d27879770d10ce970acac13c54f02ff
script_DNN_training.ipynb Mar 3, 2023 - Machine Learning Texture Optimization Jupyter Notebook - 10.0 KB - MD5: 780a3e6bdf582afd7db34856f5d00922
targets.tab Mar 3, 2023 - Machine Learning Texture Optimization Tab-Delimited - 15.9 MB - MD5: 554f247895d7f564102182f9d752d2f0
targets_test_set.tab Mar 3, 2023 - Machine Learning Texture Optimization Tab-Delimited - 514.3 KB - MD5: ed2ab79ec146027393b0a7894fb383c7
00_Readme.txt Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome Plain Text - 3.3 KB - MD5: 9bcd61f1318ea91f1dae36a2463b5c4c
01_De-novo_assemblies_from_SRA.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374 For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.
02_Genome_Annotation_Files.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37 The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...
03_Proteomes.rar Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97 A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.

00_README.txt

Mar 3, 2023 - Machine Learning Texture Optimization

Plain Text - 1.0 KB - MD5: 389bfc2f1a11e6e5d5229657a35eafb9

inputs.tab

Mar 3, 2023 - Machine Learning Texture Optimization

Tab-Delimited - 14.1 MB - MD5: ba4bc1b2c58220469b88aa09f1397912

inputs_test_set.csv

Mar 3, 2023 - Machine Learning Texture Optimization

Comma Separated Values - 403.7 KB - MD5: 4d27879770d10ce970acac13c54f02ff

script_DNN_training.ipynb

Mar 3, 2023 - Machine Learning Texture Optimization

Jupyter Notebook - 10.0 KB - MD5: 780a3e6bdf582afd7db34856f5d00922

targets.tab

Mar 3, 2023 - Machine Learning Texture Optimization

Tab-Delimited - 15.9 MB - MD5: 554f247895d7f564102182f9d752d2f0

targets_test_set.tab

Mar 3, 2023 - Machine Learning Texture Optimization

Tab-Delimited - 514.3 KB - MD5: ed2ab79ec146027393b0a7894fb383c7

00_Readme.txt

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

Plain Text - 3.3 KB - MD5: 9bcd61f1318ea91f1dae36a2463b5c4c

01_De-novo_assemblies_from_SRA.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 299.1 MB - MD5: ae7edef5e9e9fd788d95cbcd7cb30374

For the genomes downloaded from SRA database (raw data; without assembled version available), assembly was performed using SPAdes Genome Assembler software v.3.15.4 (Bankevich et al. 2012), using default parameters.

02_Genome_Annotation_Files.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 1.2 GB - MD5: 7cd4ab27f7ed6e9c56b22b118fa8cb37

The 661 assembled genomes were annotated using AUGUSTUS software v.3.4.0 (Stanke and Morgenstern 2005), considering 16 different pre-trained models, chosen as belonging to the Ascomycota phyla (11) or the Basidiomycota phyla (5): Ascomycota – S. cerevisiae S288c, C. albicans, Mey...

03_Proteomes.rar

Feb 1, 2024 - Phylogenomics and functional annotation of 530 non-Saccharomyces yeasts from winemaking environments reveals their Fermentome and Flavorome

RAR Archive - 889.4 MB - MD5: 90a5a5170220edf89555cc8702e0ee97

A consensus proteome database was prepared by considering the 530 complete genomes (from 134 species) that passed the quality control.

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