{"id":6954,"identifier":"datarepositorium/VWHFGK","persistentUrl":"https://doi.org/10.34622/datarepositorium/VWHFGK","protocol":"doi","authority":"10.34622","publisher":"Repositório de Dados da Universidade do Minho","publicationDate":"2025-06-03","storageIdentifier":"file://10.34622/datarepositorium/VWHFGK","datasetVersion":{"id":761,"datasetId":6954,"datasetPersistentId":"doi:10.34622/datarepositorium/VWHFGK","storageIdentifier":"file://10.34622/datarepositorium/VWHFGK","versionNumber":1,"versionMinorNumber":0,"versionState":"RELEASED","UNF":"UNF:6:Uc2maDQk9d3HlXPVfYcX4g==","lastUpdateTime":"2025-06-03T15:45:22Z","releaseTime":"2025-06-03T15:45:22Z","createTime":"2025-06-03T09:47:17Z","license":"NONE","termsOfUse":"<a rel=\"license\" href=\"http://creativecommons.org/licenses/by/4.0/\"><img alt=\"Creative Commons Licence\" style=\"border-width:0\" src=\"https://i.creativecommons.org/l/by/4.0/88x31.png\" /></a><br />This work is licensed under a <a rel=\"license\" href=\"http://creativecommons.org/licenses/by/4.0/\">Creative Commons Attribution 4.0 International License</a>.","fileAccessRequest":false,"metadataBlocks":{"citation":{"displayName":"Citation Metadata","fields":[{"typeName":"title","multiple":false,"typeClass":"primitive","value":"Lactic acid influences iron assimilation by a fungal pathogen via the iron reductive uptake pathway"},{"typeName":"author","multiple":true,"typeClass":"compound","value":[{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Gomes-Gonçalves, Alexandra"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"},"authorIdentifierScheme":{"typeName":"authorIdentifierScheme","multiple":false,"typeClass":"controlledVocabulary","value":"ORCID"},"authorIdentifier":{"typeName":"authorIdentifier","multiple":false,"typeClass":"primitive","value":"0000-0003-4595-5575"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Van Genechten, Wouter"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Laboratory of Molecular Cell Biology, Institute of Botany and Microbiology, K.U. Leuven, Leuven, Belgium"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Ataíde, Patricia"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Barata-Antunes, Cláudia"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Ghasemi, Faezeh"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Casal, Margarida"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Teixeira, Miguel C."},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Department of Bioengineering, Instituto Superior Técnico, Universidade de Lisboa, Lisbon, Portugal"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Ariño, Joaquín"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Institut de Biotecnologia i Biomedicina & Departament de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Brown, Alistair J. P."},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"MRC Centre for Medical Mycology at the University of Exeter, Exeter, UK"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Van Dijck, Patrick"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Laboratory of Molecular Cell Biology, Institute of Botany and Microbiology, K.U. Leuven, Leuven, Belgium"}},{"authorName":{"typeName":"authorName","multiple":false,"typeClass":"primitive","value":"Paiva, Sandra"},"authorAffiliation":{"typeName":"authorAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}}]},{"typeName":"datasetContact","multiple":true,"typeClass":"compound","value":[{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Gonçalves, Alexandra"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}},{"datasetContactName":{"typeName":"datasetContactName","multiple":false,"typeClass":"primitive","value":"Paiva, Sandra"},"datasetContactAffiliation":{"typeName":"datasetContactAffiliation","multiple":false,"typeClass":"primitive","value":"Centre of Molecular and Environmental Biology, Department of Biology, University of Minho"}}]},{"typeName":"dsDescription","multiple":true,"typeClass":"compound","value":[{"dsDescriptionValue":{"typeName":"dsDescriptionValue","multiple":false,"typeClass":"primitive","value":"Comparison of mRNA levels by RNA-Seq between Candida albicans yeast cells grown in RPMI medium in the presence of lactate, and at different extracellular pHs (pH 5; pH 7.0) (replicas per different pH and timepoint: n=3 at 1 h; and n = 1 at 0.5, 2, and 4 h - 30 samples in total)"}}]},{"typeName":"subject","multiple":true,"typeClass":"controlledVocabulary","value":["Other"]},{"typeName":"keyword","multiple":true,"typeClass":"compound","value":[{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"Candida albicans"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"carboxylic acids"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"lactate"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"iron reductive pathway"}},{"keywordValue":{"typeName":"keywordValue","multiple":false,"typeClass":"primitive","value":"iron"}}]},{"typeName":"grantNumber","multiple":true,"typeClass":"compound","value":[{"grantNumberAgency":{"typeName":"grantNumberAgency","multiple":false,"typeClass":"primitive","value":"Fundação para a Ciência e Tecnologia"},"grantNumberValue":{"typeName":"grantNumberValue","multiple":false,"typeClass":"primitive","value":"doi.org/10.54499/PTDC/BIA-MIC/5246/2020"}}]},{"typeName":"depositor","multiple":false,"typeClass":"primitive","value":"Gonçalves, Alexandra"},{"typeName":"dateOfDeposit","multiple":false,"typeClass":"primitive","value":"2025-06-03"}]},"geospatial":{"displayName":"Geospatial Metadata","fields":[]},"biomedical":{"displayName":"Life Sciences Metadata","fields":[{"typeName":"studyDesignType","multiple":true,"typeClass":"controlledVocabulary","value":["Not Specified"]},{"typeName":"studyFactorType","multiple":true,"typeClass":"controlledVocabulary","value":["Genetic Characteristics","Other","Time Point"]},{"typeName":"studyAssayOrganism","multiple":true,"typeClass":"controlledVocabulary","value":["Other"]},{"typeName":"studyAssayOtherOrganism","multiple":true,"typeClass":"primitive","value":["Candida albicans"]},{"typeName":"studyAssayMeasurementType","multiple":true,"typeClass":"controlledVocabulary","value":["Other"]},{"typeName":"studyAssayOtherMeasurmentType","multiple":true,"typeClass":"primitive","value":["RNA-Seq"]}]}},"files":[{"label":"00_Readme.txt","restricted":false,"version":1,"datasetVersionId":761,"dataFile":{"id":6957,"persistentId":"","pidURL":"","filename":"00_Readme.txt","contentType":"text/plain","filesize":3969,"storageIdentifier":"file://197352e8cda-ca061199ea06","rootDataFileId":-1,"md5":"2d5872e2367483cdfd71bfd0528f7fb5","checksum":{"type":"MD5","value":"2d5872e2367483cdfd71bfd0528f7fb5"},"creationDate":"2025-06-03"}},{"description":"excel file with \"Reads Per Kilobase Million\" data for each sample","label":"gene_FPKM.tab","restricted":false,"version":3,"datasetVersionId":761,"dataFile":{"id":6956,"persistentId":"","pidURL":"","filename":"gene_FPKM.tab","contentType":"text/tab-separated-values","filesize":1253979,"description":"excel file with \"Reads Per Kilobase Million\" data for each sample","storageIdentifier":"file://197352e97be-9cc8680ba8b8","originalFileFormat":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","originalFormatLabel":"MS Excel folha de cálculo","originalFileSize":1366511,"UNF":"UNF:6:/wdpezhETu4T2zXGyiZdpQ==","rootDataFileId":-1,"md5":"f1a353348b4e8cd9d55bf9485a08e0ab","checksum":{"type":"MD5","value":"f1a353348b4e8cd9d55bf9485a08e0ab"},"creationDate":"2025-06-03"}},{"description":"excel file with the variance stabilised transforms of each gene in the different conditions and timepoints","label":"Relative_Abundance_ALL_GENES.tab","restricted":false,"version":3,"datasetVersionId":761,"dataFile":{"id":6955,"persistentId":"","pidURL":"","filename":"Relative_Abundance_ALL_GENES.tab","contentType":"text/tab-separated-values","filesize":4660188,"description":"excel file with the variance stabilised transforms of each gene in the different conditions and timepoints","storageIdentifier":"file://197352eb546-df6feeb1ef9b","originalFileFormat":"application/vnd.openxmlformats-officedocument.spreadsheetml.sheet","originalFormatLabel":"MS Excel folha de cálculo","originalFileSize":9570870,"UNF":"UNF:6:E/O5WncR9CMargfSRuM2ow==","rootDataFileId":-1,"md5":"b325b42bb8fad31049dceb7e962cb0ee","checksum":{"type":"MD5","value":"b325b42bb8fad31049dceb7e962cb0ee"},"creationDate":"2025-06-03"}}],"citation":"Gomes-Gonçalves, Alexandra; Van Genechten, Wouter; Ataíde, Patricia; Barata-Antunes, Cláudia; Ghasemi, Faezeh; Casal, Margarida; Teixeira, Miguel C.; Ariño, Joaquín; Brown, Alistair J. P.; Van Dijck, Patrick; Paiva, Sandra, 2025, \"Lactic acid influences iron assimilation by a fungal pathogen via the iron reductive uptake pathway\", https://doi.org/10.34622/datarepositorium/VWHFGK, Repositório de Dados da Universidade do Minho, V1, UNF:6:Uc2maDQk9d3HlXPVfYcX4g== [fileUNF]"}}